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  NPS@ is the IBCP contribution to PBIL in Lyon, France |
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: Bacillus subtilis protein sequence databank added (see news)
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NPS@ is the IBCP contribution to PBIL in Lyon, France |
View Consensus in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]
10 20 30 40 50 60 70
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UNK_7620990 MESKLNLDFNLVEKARAKAKAIAIDTQEFIEKHTTVTVERAVCRLLGIDGVDTDEVPLPNIVVDHIKENN
DPM ccchhchchchhhhhhhhhhhhhhhchhhhhhccceeehhhhhhhcccccccccccccccceecchcttc
DSC cccccccchhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhcccccccccccccccccchhhhhcc
GOR4 ccccccchhhhhhhhhhhhhhhhhhhhhhhcccceeeeeeeeeeeecccccccccccccceeeeeecccc
HNNC ccccchcchhhhhhhhhhhhhhhhchhhhhhhcccchhhhhhhhhecccccccccccccceeeehecccc
PHD cccceccccchhhhhhhhhhhhhhhhhhhhhhhcceeehhhhhhhhcccccccccccccccchhhhhccc
Predator ccchhhhhchhhhhhhhhhhhhhhhhhhhhhhhcceeeehhhhhhhccccccccccccccceeecccccc
SIMPA96 cccccchhhhhhhhhhhhhhheeehhhhhhhhcchhhhhhhhheeeccccccccccccchhhhhhhcccc
SOPM hhhhhhhhhhhhhhhhhhhhheeechhhhhhttceeehhhhhhhhettttcccccccccheeeehhcttt
Sec.Cons. cccccc??hhhhhhhhhhhhhhhhhhhhhhhhcccee?hhhhhhheccccccccccccccceeehhcccc
80 90 100 110 120 130 140
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UNK_7620990 GLNLGAAMYIANAVLNTGKTPQEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRES
DPM ccccchhhhhhhhehccccccchhhhhhhhchhhcchcchhhhhhhhhhhhhhhhhhhhhhcttccchhh
DSC chhhhhhhhhhhhhhcccccchhhhhhhhccchhhhcchhhhhhhhhhhhhhhhhhhhhhhhcchhhhhh
GOR4 ccchhhhhhhhhhhhcccccchhhhhhhhhhhhhhhhccchhhhhhhhhhhhhhhhhhhhhccccccchh
HNNC cccchhhhhhhhhhhccccchhhhhhhhhhccccccccchhhhhhhhhhhhhhhhhhhhhhhcccccccc
PHD ccchhhhhhhhhhhhhcccchhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhcccchhhh
Predator cccchhhhhhhhhhhccccchhhhhhhhcccccccccccccchhhhhhhhhhhhhhhhhhhhcccchhhh
SIMPA96 cccccchhhhhhhhcccccchhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhhhhcccchhhh
SOPM tcchhhhhhhhhhhhcttccchhhhhhhhhtcccccccchhhhhhhhhhhhhhhhhhhhhhhtccccchh
Sec.Cons. ccc?hhhhhhhhhhhccccc?hhhhhhhh?ccccccccc?hhhhhhhhhhhhhhhhhhhhhhcccc?hhh
150 160 170 180 190 200 210
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UNK_7620990 RFEEYGDKSGPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATTEGFGGTYATQ
DPM hhhhttttctcceeeeeecccccccechhhhhhhhchceeheeecccccccccccccccccttcccccch
DSC hhhhhccccccceeeeecccccchhhhhhhhhhhhhhhheeeecccccccccccccccccccccccchhh
GOR4 hhhcccccccceeeeeecccccchhhhhhhhhhhhccceeeeeecccccccceecccccccccccceech
HNNC ceccccccccceeeeeeeccchhhhhhhhhhhhhcccceeeeeecccccheeeccccccccccccccchh
PHD hhhhccccccceeeeeecccchhhhhhhhhhhhhhccceeeeeecccchhhhccccccecccccccchhh
Predator hhhcccccccceeeeeeecccchhhhhhhhhhhhccccceeeeeccccccccccccccccccccccchhh
SIMPA96 hhhhccccccceeeeeecccchhhhhhhhhhhhhccceeeeeecccccceeccccccccccccccccchh
SOPM hhhhttccccceeeeeeettcchhhhhhhhhhhhttcceeeeeecttcceeeeccttcccccccccccch
Sec.Cons. hhhhccccccceeeeee?cccchhhhhhhhhhhhhccceeeeeecccccccccccccccccccccccchh
220 230 240 250 260 270 280
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UNK_7620990 ENFRLMREALDKVGAEVGKYIRLCNYCSGLCMPEIAAMGAIERLDVMLNDALYGILFRDINMQRTMIDQN
DPM hhhhhhhhhhhhhchhechcechcccccccchchhhhhhhhhhhhhhhcchhcceehhchchhhchhccc
DSC hhhhhhhhhhhhhhhhhhhheeecccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
GOR4 hhhhhhhhhhhhhhhhhcceeeeeccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhchhhhhhhcc
HNNC hhhhhhhhhhhhhhcccceeeeeeecccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhccchhhhhhhc
PHD hhhhhhhhhhhhhhhhhcceeeeeecccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhh
Predator hhhhhhhhhhhhhhhhhhhceeeccccccccchhhhhhhhhhchhhhhhchhhhhcchhhhhhhhhhhhh
SIMPA96 hhhhhhhhhhhhhhhhhhhheeeccccccccchhhhhhhhhhhhhhhhccccceeeecccccccccchhh
SOPM hhhhhhhhhhhhhhhhhhhheeehcctttcccchhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhhhh
Sec.Cons. hhhhhhhhhhhhhhhhh?h?eeeccccccccc?hhhhhhhhhhhhhhhhhhhhhhhhh??chhhhhhhhh
290 300 310 320 330 340 350
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UNK_7620990 FSRIINGFAGVIINTGEDNYLTTADAFEEAHTVLASQFINEQFALLAGLPEEQMGLGHAFEMDPELKNGF
DPM ccceeccchceeecctttccccchhhhhhhhhhhhchhhhhhhhhhhchchhhhccchhhhhhcctccch
DSC hhhhhhccceeeeccccccchhhhhhhhhhhhhhhhhhhhhhhhhhccchhhhcchhhhhcccchhhhhh
GOR4 ccccccccceeeeccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhcccccccch
HNNC hhhhhhccceeeeecccccceechhhhhhhhhhhhhhhhhhhhhhhhccchhhccccceeccccccccch
PHD hhhhhhhccceeeecccccccchhhhhhhhhhhhhhhhhhhhhhhhhcchhhccccccccccchhhhccc
Predator hhhhhhcceeeeeeccccccchhhhhhhhhhhhchhhhhhhhhhhhhccccccccccccccccccccccc
SIMPA96 hhhhhcccceeeecccccceehhhhhhhhhhhhhhhhhhhhhhhhhccccccccccccccccccccccce
SOPM hhhhhhhheeeeeetcccceeehhhhhhhhhhhhhhhhhhhhhhhhttccthhhccchhhhcctthctte
Sec.Cons. hhhhhhccceeee?cccccc?hhhhhhhhhhhhhhhhhhhhhhhhhhccchhhcccc?hhccccccccch
360 370 380 390 400 410 420
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UNK_7620990 LYELSQAQMAREIFPKAPLKYMPPTKFMTGNIFKGHIQDALFNMVTIMTNQRIHLLGMLTEALHTPFMSD
DPM hchhhhhhhhhhhhccccccccccccccccccccccchchhhhheeeecchhchhhchhhhhhccccccc
DSC hhhhhhhhhhhhhhhhccccccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhccccchh
GOR4 hhhhhhhhhhhhhccccccccccccceeeccccccchhhhhhhhhhhhhchhhhhhhhhhhcccccchhh
HNNC hhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhchhhhhhhhhhhhhcccccch
PHD hhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccch
Predator hhhhhhhhhhhhhhhcccccccccccccccccccchhhhhhhhhhhhhhchhhhhhhhhhhhhccccchh
SIMPA96 ehhhhhhhhhhhhccccccccccccceecccccchhhhhhhhhhhhhhcchhhhhhhhhhhhcccccccc
SOPM eehhhhhhhhhhccttccceeccccccccccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhccccccc
Sec.Cons. hhhhhhhhhhhhhcccccccccccccccccccccc?hhhhhhhhhhhhhchhhhhhhhhhhhhcccccch
430 440 450 460 470 480 490
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UNK_7620990 RALSIENAQYIFNNMESISEEIQFKEDGLIQKRAGFVLEKANELLEEIEQLGLFDTLEKGIFGGVKRPKD
DPM hhhhhhhhhcehcchhchhhhhhhhhcchhhhhhchhhhhhhhhhhhhhhhchhcchhcccccccctttt
DSC hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccc
GOR4 hhhhhhhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccceecccc
HNNC hhhhhhhhhhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhhhhhhhhchhhhhhhhhccccccccc
PHD hhhhhhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhccccecccc
Predator hhhhhhhcceeeccchhhhhhhhhhccceeeccchhhhhhhhhhhhhhhhhccccccccccccccccccc
SIMPA96 chhhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhchhhhhhcccccccccccc
SOPM hhhhhhhhhhhhhhhhhhhhhhhhcttthhhhhhhhhhhhhhhhhhhhhhhhhhhhhhttcettcccccc
Sec.Cons. hhhhhhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhhhhhhhhhhhhhhhhchhhhhhcccccccccccc
500 510
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UNK_7620990 GGKGLNGVVSKDENYYNPFVELMLNK
DPM ttccccceetccctcccccehhhhcc
DSC cccccceeeeccccccchhhhhhccc
GOR4 ccccceeeeecccccccceeeeeeec
HNNC cccccceeeeccccchhhhhhhhccc
PHD cccccceeecccccccccceeeeecc
Predator ccccccceeecccccccccccccccc
SIMPA96 ccccccceecccccccchhhhhhhcc
SOPM ccccceeeeecctthhhhhhhhhhht
Sec.Cons. cccccceeeeccccccc?hhhhh?cc
Sequence length : 516
DPM : Alpha helix (Hh) : 254 is 49.22% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 35 is 6.78% Beta turn (Tt) : 23 is 4.46% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 204 is 39.53% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
DSC : Alpha helix (Hh) : 333 is 64.53% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 20 is 3.88% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 163 is 31.59% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
GOR4 : Alpha helix (Hh) : 277 is 53.68% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 60 is 11.63% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 179 is 34.69% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
HNNC : Alpha helix (Hh) : 286 is 55.43% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 43 is 8.33% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 187 is 36.24% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
PHD : Alpha helix (Hh) : 303 is 58.72% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 36 is 6.98% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 177 is 34.30% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Predator : Alpha helix (Hh) : 259 is 50.19% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 37 is 7.17% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 220 is 42.64% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SIMPA96 : Alpha helix (Hh) : 268 is 51.94% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 39 is 7.56% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 209 is 40.50% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SOPM : Alpha helix (Hh) : 296 is 57.36% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 51 is 9.88% Beta turn (Tt) : 47 is 9.11% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 122 is 23.64% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Sec.Cons. : Alpha helix (Hh) : 287 is 55.62% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 29 is 5.62% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 180 is 34.88% Ambigous states (?) : 20 is 3.88% Other states : 0 is 0.00%
SOPM parameters : Window width : 17 Similarity threshold : 8 Number of states : 4
View prediction result file in MPSA : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]
View prediction result file in ANTHEPROT : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]