 |
  NPS@ is the IBCP contribution to PBIL in Lyon, France |
[HOME] [HELP] [REFERENCES] [NEWS] [MPSA] [ANTHEPROT] [PBIL]
: Bacillus subtilis protein sequence databank added (see news)
|
NPS@ is the IBCP contribution to PBIL in Lyon, France |
View Consensus in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]
10 20 30 40 50 60 70
| | | | | | |
UNK_7646150 MSSGLYSMEKKEFDKVLDLERVKPYGDTMNDGKVQLSFTLPLKNNERSAEAAKQIALKMGLEEPSVVMQQ
DPM ccccccchhhhhhhhhhhhhhcccccccccccccchcccccccttchhhhhhhhhhhhhchhhcceehhh
DSC ccccchhhhhhhhhhhhhhhcccccccccccceeeeeeecccccchhhhhhhhhhhhhccccccceeeec
GOR4 ccccccchhhhhhhhhhhhhhhccccccccccceeeeeecccccchhhhhhhhhhhhhhccccchhhhhh
HNNC cccchhhhhhhhhhhhhhhhhcccccccccccceeeeeecccccccchhhhhhhhhhhhcccccceeeec
PHD ccccccchhhhhhhhhhcccccccccccccccceeeeeecccccchhhhhhhhhhhhhhcccccceeeee
Predator ccccchhhhhhhhhhhhhhcccccccccccccceeeeeccccccchhhhhhhhhhhhhhcccccceeeec
SIMPA96 cccccchhhhhhhhhhhhhhccccccccccccceeeeeeeccccchhhhhhhhhhhhhccccccchhhhh
SOPM hhhhhhhhhhhhhhhhhhhhtccttcccccttceeeeeecccccccchhhhhhhhhhhhtccccceeehh
Sec.Cons. ccccc?hhhhhhhhhhhhhhccccccccccccceeeeeecccccchhhhhhhhhhhhhhcccccceee?h
80 90 100 110 120 130 140
| | | | | | |
UNK_7646150 SLDEEFTFFVVYGNFVQSVNYNEIHVEAVNSEILSMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAI
DPM hhhhhheeeeeecceecceccchhhhhhhcchhhhhhhchhcchhtccceeeeeccccccccccccechh
DSC cccccceeeeeeccccccccccceeeeeccccchhhcchhhhhhhhccceeeeeeecccccceeeeeeee
GOR4 hcceeeeeeeecccceeeecccchhhhhhhhhhhhhhhhhhhhhhhccceeeeeecccccccchhhhhhh
HNNC ccccceeeeeeeccceeeecccceeehhcccceeeccchhhhhhhhccceeeeeeeccccchhhhhhhhh
PHD eccccceeeeeeeeeeeeeccceeeeeeeccccccchhhhhhhhhhccceeeeeeecccccccchhhhhh
Predator ccccceeeeeeeccceeeeccceeeeeehhhhhhhhhhhhhhhhhcccceeeeeecccccccccceeehh
SIMPA96 ccccceeeeeecccccccccccceehhhhchhhhhhhhhhhhhhhhccceeeeeecccccchhhhchhhh
SOPM hhhhhheeeeeetceeecccccheehhhhhhhhhhhhhhhhhhhhtttceeeeeeeccccccceeehhhh
Sec.Cons. ccccceeeeeeecccee?eccccee?hhhc?hhhhhhhhhhhhhhhccceeeeee?ccccccc?h?hhhh
150 160 170 180 190 200 210
| | | | | | |
UNK_7646150 MNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAE
DPM hchcccctcccchhhhhhchcccccchhhhhhhhhhhhhhhheheeeceeccccececccchhhhhhhhh
DSC eeecccccccccchhhhhhhhcccchhhhhhhhhhhhhccceeeeeecccccceeeeecchhhhhhhhhh
GOR4 hhcccccccccchhhhhhhhhhccchhhhhhhhhhhhhhhhhhhhhhcccccceechhhhhhhhhhhhhh
HNNC hhhccccccchhhhhhhhhhhccccchchhhhhhhhhhhhhhhheeccccccccchhhhhhhhhhhhhhc
PHD hhhhhhhccccchhhhhhhhhcccccccchhhhhhhhhheeceeeeeeeeeecceeeechhhhhhhhhhh
Predator hhhhhcccccccccccccccccccccccccchhhhhhhhhhhhheeeccccccccccchhhhhhhhhhhc
SIMPA96 hhcccccccccchhhhhhhhcccccchhhhhhhhhhhhhccceeeeeccccccchhhhhhhhhhhhhhhc
SOPM hhhttttttttcchhhhhhhhccccccchhhhhhhhhhhhhheeeeeccccccccchhhhhhhhhhhhht
Sec.Cons. hhhccccccccchhhhhhhhhccccch?hhhhhhhhhhhhhhe?eeecccccccechhhhhhhhhhhhhh
220 230 240 250 260
| | | | |
UNK_7646150 GLRDRFVLLCGGPRINNEIAKELGYDAGFGPGRFADDVATFAVKTLNDRMNS
DPM chhhhheeccctccccchhhhhhcccccctcccchcchhhhhehchcccccc
DSC cccceeeeeccccccchhhhhhhccccccccccccccccceeeccccccccc
GOR4 hhhhhhhhhcccccccchhhhhhccccccccccccchhhhhhhhhhccceec
HNNC cccceeeeeeccccchhhhhhhccccccccccchhhhhhhhhhhhhhhcccc
PHD cccceeeeeecccccchhhhhhhccccccccchhhhhhhhhhhhhhhhcccc
Predator cccceeeeeccccchhhhhhhhhccccccccccccccccceeehhhhhcccc
SIMPA96 cccceeeeeecccchhhhhhhhccccccccccccchhhhhhhhhhhcccccc
SOPM tccceeeeeecccccchhhhhhhtccttccccccchhhhhhhhhhhhhhhhh
Sec.Cons. cccceeeee?cccccchhhhhhhcccccccccccc?hhhhhhhhhh??cccc
Sequence length : 262
DPM : Alpha helix (Hh) : 114 is 43.51% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 28 is 10.69% Beta turn (Tt) : 6 is 2.29% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 114 is 43.51% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
DSC : Alpha helix (Hh) : 77 is 29.39% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 59 is 22.52% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 126 is 48.09% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
GOR4 : Alpha helix (Hh) : 139 is 53.05% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 28 is 10.69% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 95 is 36.26% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
HNNC : Alpha helix (Hh) : 115 is 43.89% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 42 is 16.03% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 105 is 40.08% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
PHD : Alpha helix (Hh) : 100 is 38.17% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 61 is 23.28% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 101 is 38.55% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Predator : Alpha helix (Hh) : 90 is 34.35% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 46 is 17.56% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 126 is 48.09% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SIMPA96 : Alpha helix (Hh) : 117 is 44.66% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 32 is 12.21% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 113 is 43.13% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SOPM : Alpha helix (Hh) : 127 is 48.47% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 41 is 15.65% Beta turn (Tt) : 23 is 8.78% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 71 is 27.10% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Sec.Cons. : Alpha helix (Hh) : 110 is 41.98% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 37 is 14.12% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 101 is 38.55% Ambigous states (?) : 14 is 5.34% Other states : 0 is 0.00%
SOPM parameters : Window width : 17 Similarity threshold : 8 Number of states : 4
View prediction result file in MPSA : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]
View prediction result file in ANTHEPROT : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]