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  NPS@ is the IBCP contribution to PBIL in Lyon, France |
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: Bacillus subtilis protein sequence databank added (see news)
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NPS@ is the IBCP contribution to PBIL in Lyon, France |
View Consensus in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]
10 20 30 40 50 60 70
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UNK_7640130 MINRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPN
DPM cccchchhehcecccccccceeeeeceeheehhhhceecccchhhhceeeeeeeehehecccceeeeccc
DSC ccchhhhhhhcccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccc
GOR4 ccccceeeeeeeeeeccccchhhhhcchhhhhhhhhhcchhhhhhhhhhhhhhhhcccccceeeeecccc
HNNC ccchhhhhhhccccccchchhhhhhccchhhhhhhhhccccchhhhhhhhhhhhhhehcccceeeeeccc
PHD cccchhhhhcccchhhhhhhhhhhhhhhhchhhhhhhhccchhhcccchhhhccceecccchhheccccc
Predator ccchhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccceeeeecccc
SIMPA96 chhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccceeeecccc
SOPM hhhhhhhhhhhccccchhhhhhhhhhhhhhhhhhhhhccccchhhhhhhhhhhhhheecccheeeeeccc
Sec.Cons. ccchhhhhhhcccccccc?hhhhhh?hhhhhhhhhhhhccc?hhhhhhhhhhhhhhehcccceeeecccc
80 90 100 110 120 130 140
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UNK_7640130 DPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQ
DPM ccccccchhcccchhhhchhhhhhhccccccccccccccccccccceeeeeeceeceeeecccehhhhtt
DSC ccccceeeecccchhhhhhhhcccccccccccccccccccccccceeeeecccccccccccccccccccc
GOR4 ccccchhhhhhhhhhhhhhhhhhhhcccccccccccccccccccceeeeeeeceeeeecccccccccccc
HNNC cccccccccccchhhhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhccccccccccc
PHD cccccceeeeccccceeeeeccccccccccccccccccceeeccceeeeeeeccceeeeeceeecccccc
Predator cccccccccchhhhhhhhhhhhhhccccccccccccccccccccceeeeeehhhhhhhhcchhhhhhhcc
SIMPA96 cccchhhhhhhhhhhhhhhhhhhhccccccccccccccccccccceeeeeeecccccccccccccccccc
SOPM ccccccchtccchhhhhhhhhhhhhccccccccccccccccccccceeeeehhhhhhhhttccchheccc
Sec.Cons. ccccccchhccchhhhhhhhhhhh?cccccccccccccccccccceeeeeeec??????ccccccccccc
150 160 170 180 190 200 210
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UNK_7640130 SDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQR
DPM tccccchhheccheceeccccceeeeeettccceeeechceeeeeehhhhecceeeeeeccccceeeccc
DSC ccccccchhhhhhhhhhcccccceeeeeccccccchhhhhhhhhhhhhhcccccceeecccccccccccc
GOR4 cccchhhhhhhhhhhhhcccccceeeeecccchhhhhhhhhhhhhhhhcccccceeeecccccceecccc
HNNC cccccchhhhhhhhhhhcccccchhheecccceeeeechhhhhhhhhhhhccceeeeeeccccceecccc
PHD ccccccchhhhhhhhhhhhcccceeeeeeccchhhhchhhhhhhhhhhhcccceeeeeeeccceeeeccc
Predator ccccchhhhhhhhhhhhcccccceeeeeccccceeeehhhhhhhhhhhhcccceeeeeeccccceeeccc
SIMPA96 ccccchhhhhhhhhhhhcccchhhheeecccceeeechhhhhhhhhhhhcccceeeeeeccccceecccc
SOPM cccccchhhhhhhhhhhhtccccheeeetttceeeechhhhhhhhhhhhtccteeeeeeccccceecccc
Sec.Cons. cccccchhhhhhhhhhhcccccceeeeecccc?eee?hhhhhhhhhhhhcccceeeeeeccccceecccc
220 230 240 250 260 270 280
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UNK_7640130 ITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLV
DPM cccceeeeeccccceeeccccccccccchhcchhehhhhccccccctcceeeetetceeeeehheeeeee
DSC ccchhhhhhhcccceeeeccccccccchhhhhhhhhhhhhcccccccceeeeeccccchhhhhhhhhhhh
GOR4 cchhhhhhhhhccceeeeeccccccchhhhhhhhhhhhhccccccccceeeeeccccceeeeeeeeeeee
HNNC cchhhhhhhhhhccheehcccccccchhhhhhhhhhhhhhccccccccheeeecchhhhhhhhhhhhhhe
PHD cchhhhhhhhhhceeeeeeccccchhhhhhhhhhhhhhhhccceeeeeeeeeeeccchhhhhhhhhhhhh
Predator chhhhhhhhhccccccccccccccccccchhhhhhhhhhhccccccceeeeeecccccchhhhhhhhhhh
SIMPA96 hhhhhhhhhhhccceeeecccccccchhhhhhhhhhhhhhccccccceeeeecchhhhhhhhhhhhhhhh
SOPM cchhhhhhhhtccceeeecccccccchhhhhhhhhhhhhhttcccccceeeeechhhhhhhhhhhhhhhh
Sec.Cons. cchhhhhhhhhccceeeecccccccchhhhhhhhhhhhhhcccccccceeeeecccchhhhhhhhhhhhh
290 300 310 320 330 340 350
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UNK_7640130 KIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSH
DPM eeeeecceeeeccccccchceccceccceeeehcccccccccceceeeecctttccccccccceeeeccc
DSC hcccccceeeeccccccccccccccchhhhhhhhhhcccccccccceeeecccccccccccccccccccc
GOR4 eeeeeeeeeeecccccccccccccccccceeeecccccccccceeeeeeeccccccccccccceeecccc
HNNC eeeecceeeeeecccccchhcccccccceeeeeccccccccceeeeeeeccccccccccccceeeeeccc
PHD hcccceeeeeeeeccccccceccchhhhhhhhhhhhhhcccccccceeeeccccccccccccccceeccc
Predator hhhccceeecccccccccceeecccccceeeeecccccccccccceeeeeccccccccccccceeeeccc
SIMPA96 hhhccceeeeeccccccccccccccccchhhhhccccccccccceeeeecccccccccccccceeecccc
SOPM heecccteeecccceechhhccccccccheeeettttcccccccceeeeecttcccccccccceeeettc
Sec.Cons. heeccceeeeecccccccccccccccccheee?cccccccccccceeeeeccccccccccccceeeeccc
360 370 380 390 400 410
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UNK_7640130 DKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNKRHVQE
DPM ceeeeetecceeeeccccccccctttcceectccceeeeceecectccchhhhcecctctcccecc
DSC ccceecccccccccccccccccccccceeeccccccceeeeeeeccccccccchhhhhhhhhhccc
GOR4 chhhhhccccceeeeccceeeeccccceecccccccceeeeeeeecccccccccccccccccceec
HNNC chhehhccceeeeeeccccccccccccccccccceeeeeeeeeeccccchcccccchhhchccccc
PHD ceeeeeeceeeeecccccccccccccccccccceeeeeeeeeeecccccceeeccccccccccccc
Predator ccceeeeceeeeeeecccccccccccccccccccceeeeecccccccccccccccccccccccccc
SIMPA96 ceeeeecccceeeccccccccccccccccccccccccccceeeeecccceeeccccccccchhhhc
SOPM ceeeeecctheeeeccccccccttccceeettccceeeeeeeeeetttteeeeeeeccccccchhh
Sec.Cons. ceeeeecccceeeecccccccccccccc?cccccceeeeeeeeecccccccccccccccccccccc
Sequence length : 416
DPM : Alpha helix (Hh) : 57 is 13.70% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 140 is 33.65% Beta turn (Tt) : 19 is 4.57% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 200 is 48.08% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
DSC : Alpha helix (Hh) : 123 is 29.57% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 46 is 11.06% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 247 is 59.38% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
GOR4 : Alpha helix (Hh) : 107 is 25.72% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 105 is 25.24% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 204 is 49.04% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
HNNC : Alpha helix (Hh) : 146 is 35.10% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 72 is 17.31% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 198 is 47.60% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
PHD : Alpha helix (Hh) : 121 is 29.09% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 104 is 25.00% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 191 is 45.91% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Predator : Alpha helix (Hh) : 135 is 32.45% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 71 is 17.07% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 210 is 50.48% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SIMPA96 : Alpha helix (Hh) : 147 is 35.34% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 64 is 15.38% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 205 is 49.28% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SOPM : Alpha helix (Hh) : 143 is 34.38% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 87 is 20.91% Beta turn (Tt) : 30 is 7.21% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 156 is 37.50% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Sec.Cons. : Alpha helix (Hh) : 115 is 27.64% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 74 is 17.79% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 213 is 51.20% Ambigous states (?) : 14 is 3.37% Other states : 0 is 0.00%
SOPM parameters : Window width : 17 Similarity threshold : 8 Number of states : 4
View prediction result file in MPSA : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]
View prediction result file in ANTHEPROT : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]