NPS@ is the IBCP contribution to PBIL in Lyon, France |
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: Bacillus subtilis protein sequence databank added (see news)
NPS@ is the IBCP contribution to PBIL in Lyon, France |
View Consensus in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]
10 20 30 40 50 60 70
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UNK_7585500 MTKNESYSGIDYFRFIAALLIVAIHTSPLFSFSETGNFIFTRIVAPVAVPFFFMTSGFFLISRYTCNAEK
DPM cccttttctccchhhhhhhheehecccccccccttcceeeeeeehceheceeehccceeeeeccccthhc
DSC ccccccccccchhhhhhheeeeeecccccccccccccceeeeeccccccceeeccccceeeeccccchhh
GOR4 cccccccccchhhhhhhhhhhhhccccccccccccccceeeeecccccccccccccceeeeecccccccc
HNNC cccccccchhhhhhhhhhhhhhhhhcccceeeccccceeeeeeeccccccheehccchhhhhccccchhh
PHD cccccccccchhhhhhhhhhhhhhhcccceeeecccceeeeeeeeeeeeeeeeeccceeeeecccchhhh
Predator ccccccccccchhhhhhhhhhhhhcccccccccccccceeeeeeeccceeeeecccceeeeecccchhhh
SIMPA96 ccccccccchhhhhhhhhhheeecccccccccccccceeeeeeccccccceeecccceeeeeccccchhh
SOPM hccttccttchhhhhhhhhheeeeccccceeecttcceeeeeeccccccceeeecttceeeehcccchhh
Sec.Cons. cccccccccchhhhhhhhhh??h?ccccccccccccceeeeee?cccccceeecccceeeeeccccchhh
80 90 100 110 120 130 140
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UNK_7585500 LGAFIKKTTLIYGVAILLYIPINVYNGYFKMDNLLPNIIKDIVFDGTLYHLWYLPASIIGAAIAWYLVKK
DPM hchhhhhcceeeeeeeeeeececectcccchcccccceecceeeccccccccccccceechhhhhheehh
DSC hhhhhcccceeeeeeeeeeecccccccccccccccccccceeeccccccccccccccccccchhhhhhhh
GOR4 cccccccchhhhceeeeeecccceeccccccccccccceeeeeeccceeceeecccchhhhhhhhhhhhh
HNNC hhhhhhhhhhhhhhhheeeecccecccceehchhhhhhhhhheecccheeheecchhhhhhhhhhhhhhh
PHD hhhhhceeeeeecceeeeeeeeccccccccccccchhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhh
Predator hhhhhcceeecccceeeeeeccccccccccccccccchhhhhcccceeeeeeeccchhhhhhhhhhhhhh
SIMPA96 hhhhhhhhhhhhceeeeeecccccccccccccccchhhhhhhcccccceeeeecchhhhhhhhhhhhhhh
SOPM hhhhhhhheeeeeeeeeeeccccettcchhhhtcchhhhhhheettceeeeeecccchhhhhhhhhhhhh
Sec.Cons. hhhhh?h??eeeceeeeeeeccc?ccccccccccc??hhhhheeccc?eeeeeccc?hhhhhhhhhhhhh
150 160 170 180 190 200 210
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UNK_7585500 VHYRKAFLIASILYIIGLFGDSYYGIVKSVSCLNVFYNLIFQLTDYTRNGIFFAPIFFVLGGYISDSPNR
DPM ehhhhhhhhheeeeeeccctttccceeeeeeeeceeeceeehhccccccccehhceeeeecccctctttc
DSC hccchhhhhhhheeeeecccccccceeecccccccccceeeeccccccccccccceeeeecccccccccc
GOR4 hhhhhhhhhhhhheeeecccccceeeeeeecccccccccceeccccccccceecceeeeccccccccccc
HNNC hhhhhhhhhhhhhhhhhhcccccheheeeehhhhhhhhhhhhhhccccccheehhhhhhhcccccccccc
PHD hhhhhhhhhhhhhhhhhhccccceeeeeeeccehhhhhhhhhhhhhhhcccceceeeeececeeeccccc
Predator chhhhhhhhhhhhhhhhcccccceeeeeccccchhhhhhhhhcccccccceeeeeeeeeecccccccccc
SIMPA96 hhhhhhhhhhhheeeecccccchhhhhhhhhhhhhhhhhhhhcccccccceeeeeeeeeecccccccccc
SOPM cchtthhhhhhhhheeeecccchhhhhhhhhhhhhhhhhheeehcccttteeecceeeeetccccccttt
Sec.Cons. hhhhhhhhhhhhh?ee?cccccc?eeeeeecc?hhhhhhh?hccccccccceecceeeeecccccccccc
220 230 240 250 260 270 280
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UNK_7585500 YRKKNYIRIYSLFCLMFGKTLTLQHFDIQKHDSMYVLLLPSVWCLFNLLLHFRGKRRTGLRTISLDQLYH
DPM cctccceeeeeeeehhhccchchhhhhhhccccheeeeecceeeehhhhhhhhtcctcccccechccccc
DSC ccccccceeeeeeeccccccccccccccccccceeeeecccchhhhhhheecccccccccceeecccccc
GOR4 ccccceeeeeeeeeecccccceecceeeecccceeeeeecccccccchhhhccccccccceeecccceec
HNNC cchchheeehhhhhhhccccceeeeeeeccccceeeeehhhhhhhhhhhehcccccccceeeeeeeeecc
PHD ccccceeeeeecceeccccceeeeccccccccceeeeeeccchhhhhhhhhhcccecccccceeccccce
Predator ccccceeeeeehhhhhhcceeeeccccccccccceeeeeccchhhhhhhhhcccccccceeeeeeccccc
SIMPA96 cccccceeeeeeeeeeccceeeeeccccccccceeeeeeccchhhhheeeeecccccccceeeehhhhcc
SOPM cccccheeeeeeeeeetttteeeeeeeccttcceeeeecchhhhhhhhhheettcccccceeeeehhhhh
Sec.Cons. ccccc?eeeeeeeee?cccceeeeccccccccceeeeeeccchhhhhhhhhccccccccceeee?ccccc
290 300 310 320 330 340 350
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UNK_7585500 SSVYDCCNTIVCAELLHLQSLLVENSLVHYIAVCFASVVLAVVITALLSSLKPKKAKHTADTDRAYLEIN
DPM ccecccccceehhhhhhhhhhhhhcceeeeeheeeheeeeeeeeehhhccctccchchchccchhhhhhc
DSC ccccccccceeehhhhhhhhhhhcccccceeeeecccceeeeeeeecccccccccccccccchhhhheee
GOR4 cceecccceeeecchhhhhhhhhhcceeeeeeecccccchhhhhhhhhhhcchhhhhcccccchhhhhhh
HNNC ccchhhhhhheehhhhhhhhhehcchhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccchhhhhhheh
PHD cccchhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeeeehhhhhhhhhhhhcccccccccchhhhhhhhh
Predator cccccccccchhhhhhhhhhhhcccccceeehhhhhhhhhhhhhhhhccccccccccccccccceeeeec
SIMPA96 cccccccceeehhhhhhhhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhcccccccccccchhhhhhhc
SOPM hhhhhtthhhhhhhhhhhhhhhhhtthhheeehhhhhhhhhhhhhhhhhtccttccccccccchhheehh
Sec.Cons. cccccccc?eehhhhhhhhhhhh?cc??eee??hhhhhhhhhhhhhhhhhcccccccccccc?hhhhhhh
360 370 380 390 400 410 420
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UNK_7585500 LNNLEHNVNTLQKAMSPKCELMAVVKAEAYGHGMYEVTTYFEPIGVFYLAVATIDEGIRLRKYGIFSEIL
DPM cccccctecchhhhhttchhhhhhhhhhhtcccccheeccccccceeehhehhechchhhhhcceeehee
DSC hhhhhhhhhhhhhcccccceeeeeeeecccccccchhhhhhhhcccchheehhhhhhhhhhhhhccccee
GOR4 hhhhhhchhhhhhccccchhhhhhhhhhhcccceeeeeeeccccceeeeehhhhhhhhhhhhcccceeee
HNNC ccccccchhhhhhcccchhhhhhhhhhhhhcccceeeeeeccchhhhhhhhhhhhhhhhhchccecheee
PHD hhhhhhhhhhhhhhccccceeeeeeeecccccchhhhhhhhhhhhhhhheccchhhhhhhhhhhccccee
Predator cccccccccccccccccchhhhhhhhhhhcccceeeeeecccccchhhhhhhcccccccccccccceeee
SIMPA96 hhhhhhhhhhhhhhccchhhhhhhhhhccccccceeeeecccccceeeeehhhhccchhhhhccccceee
SOPM hhhhhhhhhhhhhhhccthhhhhhhhhhhtttthheeeeeccctteeeeeehhhhttceechtteehhee
Sec.Cons. hhhhhhhhhhhhh?cccchhhhhhhhhhhccccceeeee?cccccee?hehhhhhhhhhhhhcccc?eee
430 440 450 460 470 480 490
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UNK_7585500 ILGYTSPSRAKELCKFELTQTLIDYRYLLLLNKQGYDIKAHIKIDTGMHRLGFSTEDKDKILAAFFLKHI
DPM eecccctcchhhhhhhhhhhceecchehhhhttccccchhhehccccccccccttctcchhhhhhhhhhe
DSC eecccccchhhhhcceeeccccccchhhhhhhhhhccceeeeeeccccceeeecchhhhhhhhhhhcchh
GOR4 eecccccchhhhhhhhcccchhhhhhhhhhhcccccceeeeeccccceeeecccchhhhhhhhhhhhhhh
HNNC eeecccccchhhhhhhhhhhhhhhhhhhhhhhcccccheeeeeeccccccecccccchhhhhhhhhhhhh
PHD eeecccchhhhhhhhhhhheeccchhhhhhhhhhhhheeeeeeeccccccccccchhhhhhhhhhhhhce
Predator eecccccchhhhhhhhhhhhhhchhhhhhhhhcccccceeeeecccccccccccccccchhhhhhhhhhh
SIMPA96 eeccccchhhhhhhhhhhhhhhhhhhheeeecccccccceeeeecccceeeccccchhhhhhhhhhhhhc
SOPM eeeccccchhhhhhhhhhhhhhhhhhheeeettttcceeeeeeecttceeetccccchhhhhhhhhhhhc
Sec.Cons. eecccccchhhhhhhhhhhhhhhhhhhhhhhhcccccceeeeeeccccc?eccccchhhhhhhhhhhhhh
500 510 520 530 540 550 560
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UNK_7585500 KVAGIFTHLCAADSLEEKEVAFTNKPIGSFYKVLDWPKSSGLNIPKVNIQTSYGLWNIQSWNVIYQSGVA
DPM hehceechhhhhhchhhhhhhhccccctccccehcccttccccccceccccccccccccccceeeccceh
DSC hccceeeeehhhhhhhhhheeeccccccceeeeeccccccccccceeeeeeccccccccccceeecccee
GOR4 ceeeeeeeeeeccchhhhhhhhcccccceeeeeeccccccccccceeeeeeeeeeeeeeeceeecccccc
HNNC ehcceeeeeecccchhhhhhhhccccccceeeeecccccccccccceeeeecccceeecchhhhhhcche
PHD eeeeccceeeccccccchhhhhhhhhccchhhhhhhhhhcccccceeeeecchhhccccchhhhhcccce
Predator heeeeeeeeeechhhhhhhhccccccccceeeecccccccccccccccccccccccccccceeeeeccce
SIMPA96 cccceeeeeecchhhhhhhheeccccccceeeeeccccccccccccccccccccccccccceeecccccc
SOPM eehceeehhhhhhhhhhhhheecccccccheeeeeccccttccccceeeccccceeeeccceeeecttce
Sec.Cons. ?e?ceeeeee?ch?hhhhhhhhccccccceeeeecccccccccccceee?ccccccccccceeeecccce
570 580 590 600 610 620 630
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UNK_7585500 LYGVLRSTNDKTKLETDLRACSFLKAKVVLIRKIKQGGSVGYSRAFTATRDSLIAILPIGYADGFPRNLS
DPM eeceectcttccchhhhhhhhhhhhhheeeehhhttcctcccchhhhhchccheheecccccccttcctt
DSC eeeccccccccccccccccchhhhcchheeecccccccccccceeeccccccceeeeccccccchhhhhc
GOR4 eeeeeccccccchhhhhhhhhhhhhhhhhhhhhccccccceeeeeeeechhhhheeeccccccccccccc
HNNC eeeeeecccccccchhhhhhhhhhhhhhhhhhhhhhccccccheeeecccccheeeeeccccchhccccc
PHD eeeecccccccccccccccccchhhhhhhhhhhhccccccccceeeeccccceeeecccccccchhhccc
Predator eeeeeccccchhhhhhhhhhhhhcchhhhhhccccccccccccccccccccceeeeeccccccccceeec
SIMPA96 hhhhhcccccchhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhcccccceeeeccccccccccccc
SOPM eeeeeeccccccchhhhhhhhhhhhhheeeeeeccttcccceehhhhhhhhhheeeecccccttcccccc
Sec.Cons. eeeeecccccccchhhhhhhhhhhhhhhhhhhh?ccccccccceee?cccccheeeeccccccccccccc
640 650 660 670 680 690 700
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UNK_7585500 CGNSYVLIGGRQAPIVGKICMDQLAVDVTDIPNVKTGSIATLIGKDGKEEITAPMVAESAESITNELLSR
DPM tttcceeetccccceeccehhhhhhececccccctcccecchcttccchhhhhchhhhhhhcccchhhhh
DSC cccceeeecccccceeeeeechheeeeccccccccccceeeeeccccccccchhhhhhhhcccceeeecc
GOR4 ccceeeeecccccceeccccccccceeeeccccccccceeeeecccccceechhhhhhhhhhhhhhhhhh
HNNC ccceeeeeeccccceeeeeehchhhechccccccccceeeeeeccccchcccccchhhhhhhhhhhhhhh
PHD cccceeeeeccceeeeeeeechhhheeccccccccccceeeeeecccccccchhhhhhhhccceeeehhh
Predator ccceeeeeccccceeehhhhhhhhhhhcccccccccccceeeeccccccccchhhhhhhhhhhhhhhhhh
SIMPA96 ccceeeeeccccccccchhhhccccccccccccccccceeeeeccccccchhhhhhhhhhhhhhhhhhhh
SOPM ttceeeeetccccceeeeechhhheeeetccccccccceeeeecccccchhhhhhhhhhhhhhhhhhhhh
Sec.Cons. ccceeeeecccccceeeee?hhhhheeccccccccccceeeeeccccccccchhhhhhhhhhhhhhhhhh
710
|
UNK_7585500 MEHRLNIIRRA
DPM hhhhhheehcc
DSC cchhhhhhhcc
GOR4 hhhhheeeeec
HNNC hhhhhhhhhcc
PHD hhhhhhhhccc
Predator hhhhhhhhccc
SIMPA96 hhhhhhhhhhc
SOPM hhhhhhhhhhh
Sec.Cons. hhhhhhhhhcc
Sequence length : 711
DPM : Alpha helix (Hh) : 222 is 31.22% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 158 is 22.22% Beta turn (Tt) : 50 is 7.03% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 281 is 39.52% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
DSC : Alpha helix (Hh) : 158 is 22.22% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 172 is 24.19% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 381 is 53.59% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
GOR4 : Alpha helix (Hh) : 206 is 28.97% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 188 is 26.44% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 317 is 44.59% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
HNNC : Alpha helix (Hh) : 333 is 46.84% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 136 is 19.13% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 242 is 34.04% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
PHD : Alpha helix (Hh) : 287 is 40.37% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 167 is 23.49% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 257 is 36.15% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Predator : Alpha helix (Hh) : 226 is 31.79% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 139 is 19.55% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 346 is 48.66% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SIMPA96 : Alpha helix (Hh) : 274 is 38.54% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 132 is 18.57% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 305 is 42.90% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SOPM : Alpha helix (Hh) : 280 is 39.38% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 185 is 26.02% Beta turn (Tt) : 67 is 9.42% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 179 is 25.18% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Sec.Cons. : Alpha helix (Hh) : 241 is 33.90% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 143 is 20.11% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 287 is 40.37% Ambigous states (?) : 40 is 5.63% Other states : 0 is 0.00%
SOPM parameters : Window width : 17 Similarity threshold : 8 Number of states : 4
View prediction result file in MPSA : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]
View prediction result file in ANTHEPROT : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]