 |
  NPS@ is the IBCP contribution to PBIL in Lyon, France |
[HOME] [HELP] [REFERENCES] [NEWS] [MPSA] [ANTHEPROT] [PBIL]
: Bacillus subtilis protein sequence databank added (see news)
|
NPS@ is the IBCP contribution to PBIL in Lyon, France |
View Consensus in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]
10 20 30 40 50 60 70
| | | | | | |
UNK_9791210 MCAQYCISFADVEKAHINIQDSIHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPD
DPM ccheeeeeehcehhhcececcceceeceeeeceeccectcceeehehhectctceceechhcheeccccc
DSC cccccccchhhhhhhhhhhhhhccccccchhhhhhhhccceeeeeeccccccceeeeecchhhhhhhhhc
GOR4 ccccccccccccchhhhccccccccccccchhhhhhhhhhchhhheeeeccccchhhhhhhhhhhccccc
HNNC ccceeeeeehhhhhhhhhhhhcccccchhhhhhhhhhccchheeeehhhccccchhehhhhhhhhhcccc
PHD ccceeeeechhhhhhhhhhhhhccccccccchhhhhhccceeeeeecccccccccccchhhhhhhhhhhh
Predator ccceeeeeecccccccccccccceeeccchhhhhhhhcccceeecccccccccccchhhhhhhhhhcccc
SIMPA96 cccceeeccccccccccccccccccchhhhhhhhhhhcccceeeeeeeeccccchhhhhhhhhhhhcccc
SOPM hhhhheeehhhhhhtccccccccccchhhhhhhhhhhttcceeeehhhhhcccccchhhhhhhhhtcccc
Sec.Cons. ccceeeee?h?hhhh?hcccccccccccchhhhhhhhcccceeeee???ccccc?chhhhhhhhhhcccc
80 90 100 110 120 130 140
| | | | | | |
UNK_9791210 TPEEKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYCDPSDESREKVTQ
DPM ccccccceeeecctttccccccchhhhccccceeeecccccctcchhehhccceeeeccccccthhheee
DSC ccccceeeeccccccccchhhhhhhhhhccceeeecccccchhhhhhhhcccceeeecccccccchhhhh
GOR4 ccccccceeeeeccccchhhhhhhhhhccccceeeecccccccchhhhccccceeeeccccccchhhhhh
HNNC ccccccceeeeeccccchhhhhhhhhhcccceeeeecccccchhheeehcccceeeeecccccchhhhhh
PHD ccccceeeeeeccchhhhhhhhhhhhhhccceeeeecccccccchhheeccceeeeeecccchhhhhhhh
Predator cccccceeeeeecccccchhhhhhhhhccccceeeeeccccchhhhhhhhccceeeecccccchhhhhhh
SIMPA96 cccccceeeeeccccccchhhhhhhhccccceeeeccccccchhhhhhhhccceeeeccccchhhhhhhh
SOPM ccccccceeeeecccctthhhhhhhhhttcceeeeecccccccceeeeehttceeeeecccccchhhhhh
Sec.Cons. cccccc?eeee?cccccchhhhhhhhhcccceeeeecccccch?hhh?h?ccceeeeccccccchhhhhh
150 160 170 180 190 200 210
| | | | | | |
UNK_9791210 RIMQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMVAGIAITIKALKPSVKVYAAE
DPM eeehhccceeeccccccheectccceeeheeceeceeceeeecettccceeeeeeeeehctcceeeehht
DSC hhhhhccceeecccccccccccccccchhhhhhhcccceeeeecccccceeeeeeecccccccceeeeec
GOR4 hhhhhhcceeecccccceeecccchhhhhhhccccccceeeeccccccchhhhhhhhhhccccceeeeec
HNNC hhhhhccceeecccccceeeecccceeeehhcccccceeeeeecccchhhhhhhehhhhcccceeeeeec
PHD hhhhcccceeeeccccccccccccchhhhhhhhhhccceeeeeccchhhhhhhhhhhhhhcccceeeeee
Predator hhhhhhhheeecccccceeeeccchhhhhhhhceeeceeeeeecccceeehhhhhhhhhcccceeeeeec
SIMPA96 hhhhhccceeecccccceeecccchhhhhhhccccccceeeeecccccchhhhhhhhhhccccceeeecc
SOPM hhhhttteeeecttccceeeetccceehhhhttcccceeeeeeetttceeeeeeeehhhccttceeeecc
Sec.Cons. hhhhhccceeecccccceeeccccchhhhhhccccccceeeeecccccc?hhhh?hhhhccccceeeeec
220 230 240 250 260 270 280
| | | | | | |
UNK_9791210 PSNADDCYQSKLKGELTPNLHPPETIADGVKSSIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKL
DPM cctcccccccctcccccccccccccccccecceecccccceeeeeeceeeeeehcheccceeeeecehhe
DSC cccccccchhcccccccccccccccccccccccccccchhhhhhhhhhheeecchhhhhhhhhhhcceee
GOR4 cccccchhhhccccccccccccccceeccceeeccccccceeecccccceeechhhhhhhhhhhhhhhhe
HNNC ccccccchhhcccccccccccccccchhchhcceccccchhhhhhhhhhhhhchhhhhhhhhhhhcccee
PHD ccchhhhhhhhhcccccccccccccccccccccchhhhhhhhhhhccceeeeecchhhhhhhhhhhhccc
Predator cccccchhhhhhhcccccccccccccccccccccccccccccccccccceeechhhhhhhhhhhhhhhhh
SIMPA96 ccccchhhhhhcccccccccccchhhhhcccccccccchhhhhhhhhhheeehhhhhhhhhhhhhcccee
SOPM ccccchhhhhhhccccccccccccchhhhhhhhccccccchhhhhhhhheeechhhhhhhhhhhhhhhee
Sec.Cons. cccccchhhh?cccccccccccccccccccccccccccc?hhhhhh?hheeechhhhhhhhhhhh?hhee
290 300 310 320 330
| | | | |
UNK_9791210 LIEPTAGVALAAVLSQHFQTVSPEVKNVCIVLSGGNVDLTSLNWVGQAERPAPYQTVSV
DPM eecccccehhhheeeeceeeeccceceeeeeettctececceceechhhcccccceecc
DSC eeccccchhhhhhhhhhhhhccccccceeeeeccccccchhhhhhhhhccccccccccc
GOR4 eecchhhhhhhhhhhhhcceeccccceeeeeeccccceeeeeccccccccccceeeeec
HNNC eecccchhhhhhhhhhhhhhcccccceeeeeecccccceeceeeccccccccccccccc
PHD eeccchhhhhhhhhhhhhccccccccceeeeeeccchhhhhhhhhhhhhcccccceeec
Predator hccccchhhhhhhhhhhhccccccccceeeeeccccccccccccccccccccccccccc
SIMPA96 eecccchhhhhhhhhhhhccccccccceeeeeccccceeeeeeeccccccccccceeec
SOPM eecttchhhhhhhhhhhhhhccttcceeeeeettccceeeeeehhcccccccccceeee
Sec.Cons. eecccchhhhhhhhhhhhc?cccccc?eeeeeccccccee?e??cccccccccccee?c
Sequence length : 339
DPM : Alpha helix (Hh) : 40 is 11.80% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 128 is 37.76% Beta turn (Tt) : 18 is 5.31% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 153 is 45.13% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
DSC : Alpha helix (Hh) : 112 is 33.04% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 56 is 16.52% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 171 is 50.44% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
GOR4 : Alpha helix (Hh) : 105 is 30.97% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 64 is 18.88% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 170 is 50.15% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
HNNC : Alpha helix (Hh) : 122 is 35.99% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 69 is 20.35% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 148 is 43.66% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
PHD : Alpha helix (Hh) : 142 is 41.89% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 61 is 17.99% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 136 is 40.12% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Predator : Alpha helix (Hh) : 104 is 30.68% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 60 is 17.70% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 175 is 51.62% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SIMPA96 : Alpha helix (Hh) : 116 is 34.22% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 61 is 17.99% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 162 is 47.79% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
SOPM : Alpha helix (Hh) : 118 is 34.81% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 79 is 23.30% Beta turn (Tt) : 29 is 8.55% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 113 is 33.33% Ambigous states (?) : 0 is 0.00% Other states : 0 is 0.00%
Sec.Cons. : Alpha helix (Hh) : 101 is 29.79% 310 helix (Gg) : 0 is 0.00% Pi helix (Ii) : 0 is 0.00% Beta bridge (Bb) : 0 is 0.00% Extended strand (Ee) : 56 is 16.52% Beta turn (Tt) : 0 is 0.00% Bend region (Ss) : 0 is 0.00% Random coil (Cc) : 158 is 46.61% Ambigous states (?) : 24 is 7.08% Other states : 0 is 0.00%
SOPM parameters : Window width : 17 Similarity threshold : 8 Number of states : 4
View prediction result file in MPSA : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]
View prediction result file in ANTHEPROT : [DPM]
[DSC]
[GOR4]
[HNN]
[PHD]
[PREDA]
[SIMPA96]
[SOPM]