NPS@ similarity search results

NPS@ is the IBCP contribution to PBIL in Lyon, France

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Tuesday, June 6th 2000 : Bacillus subtilis protein sequence databank added (see news)

BLASTP results for : UNK_10185770

View BLASTP in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]

View graphic in : [MPSA] [AnTheProt]

First step : sequences before [go to EXTRACT].

with E threshold lesser or equal to
and matching any residue from to of query sequence.

You can also select/unselect sequence by clicking on checkbox below after SELECT and before EXTRACT.

                                                                        Score     E
Sequences producing significant alignments:                             (bits)  Value

 NPSA swnew||YODO_BACSU HYPOTHETICAL 54.1 KDA PROTEIN IN DEOD-ARGE IN...   526  e-149
 NPSA sw||Y454_AQUAE HYPOTHETICAL PROTEIN AQ_454.                          376  e-104
 NPSA sw||YG32_AQUAE HYPOTHETICAL PROTEIN AQ_1632.                         210  4e-54
 NPSA sw||Y121_TREPA HYPOTHETICAL PROTEIN TP0121.                          195  1e-49
 NPSA sw||YJEK_HAEIN HYPOTHETICAL PROTEIN HI0329.                          186  8e-47
 NPSA sw||YJEK_ECOLI HYPOTHETICAL 38.7 KD PROTEIN IN MOPA-EFP INTERGE...   181  2e-45
 NPSA sw||Y634_METJA HYPOTHETICAL PROTEIN MJ0634.                          119  9e-27
 NPSA swnew||YJEK_BUCAP HYPOTHETICAL PROTEIN IN GROEL 5'REGION (FRAGM...    83  7e-16
 NPSA sw||NIFB_RHILT NIFB PROTEIN.                                          42  0.002
 NPSA swnew||NIFB_RHIME NIFB PROTEIN.                                       40  0.008
 NPSA sw||POL_FIVSD POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN)...    38  0.039
 NPSA sw||POL_FIVPE POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN)...    38  0.051
 NPSA sw||NIFB_RHISN NIFB PROTEIN.                                          37  0.087
 NPSA sw||POL_FIVT2 POL POLYPROTEIN [CONTAINS: PROTEASE (RETROPEPSIN)...    36  0.11
 NPSA sw||MOAA_ARTNI PROBABLE MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEI...    34  0.44
 NPSA sw||YG4I_YEAST HYPOTHETICAL 45.2 KD GTP-BINDING PROTEIN IN TRX1...    34  0.57
 NPSA sw||PT11_YEAST PET111 PROTEIN PRECURSOR.                              32  1.7
 NPSA sw||NIFB_BRAJA NIFB PROTEIN.                                          32  2.2
 NPSA swnew||Y907_METJA HYPOTHETICAL PROTEIN MJ0907.                        32  2.2
 NPSA sw||NIFB_RHOCA NIFB PROTEIN.                                          32  2.9
 NPSA sw||NIFB_AZOVI NIFB PROTEIN.                                          32  2.9
 NPSA sw||YSCN_YERPS PROBABLE ATP SYNTHASE YSCN (EC 3.6.1.34) (YOPS S...    31  6.5
 NPSA sw||YSCN_YEREN PROBABLE ATP SYNTHASE YSCN (EC 3.6.1.34) (YOPS S...    31  6.5
 NPSA sw||PLO3_HUMAN PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE ...    30  8.6
 NPSA sw||MSG5_YEAST PROTEIN-TYROSINE PHOSPHATASE MSG5 (EC 3.1.3.48).       30  8.6
 NPSA swnew||MOAA_CLOPE MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN A.         30  8.6

Total number of displayed sequences (E lesser or equal to 10) : 26
Total number of selected sequences
   (E lesser or equal to 1e-06, matching residues 1-416 of query) : 8

Second step : for selected sequences above : [back to SELECT]

Full sequences from database
Partial sequences from blastp alignments

For partial extraction : extract sequence with at least residues in matching region 1-416 (416 residues) of query.
Add query sequence to created database.
Remove identical sequences in created database.

Information and statistics : [BLASTP]

Homology search result file (text): [BLASTP]

This service is supported by MESR (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE)
Comments. Last modified: Mon Jun 19 06:00:32 2000. Current time: Mon Jun 19 06:00:32 2000