NPS@ similarity search results

NPS@ is the IBCP contribution to PBIL in Lyon, France

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Tuesday, June 6th 2000 : Bacillus subtilis protein sequence databank added (see news)

BLASTP results for : UNK_8803620

View BLASTP in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]

View graphic in : [MPSA] [AnTheProt]

First step : sequences before [go to EXTRACT].

with E threshold lesser or equal to
and matching any residue from to of query sequence.

You can also select/unselect sequence by clicking on checkbox below after SELECT and before EXTRACT.

                                                                        Score     E
Sequences producing significant alignments:                             (bits)  Value

 NPSA nrl3d||1SFTB alanine racemase (EC 5.1.1.1), chain B - Bacillus ...   173  2e-43
 NPSA nrl3d||1SFTA alanine racemase (EC 5.1.1.1), chain A - Bacillus ...   173  2e-43
 NPSA nrl3d||1BD0B alanine racemase (EC 5.1.1.1), chain B - Bacillus ...   173  2e-43
 NPSA nrl3d||1BD0A alanine racemase (EC 5.1.1.1), chain A - Bacillus ...   173  2e-43
 NPSA nrl3d||2SFPB alanine racemase (EC 5.1.1.1) linkage with lys39. ...   170  9e-43
 NPSA nrl3d||2SFPA alanine racemase (EC 5.1.1.1) linkage with lys39. ...   170  9e-43
 NPSA nrl3d||1BTMB triosephosphate isomerase (EC 5.3.1.1), chain B - ...    29  5.8
 NPSA nrl3d||1BTMA triosephosphate isomerase (EC 5.3.1.1), chain A - ...    29  5.8
 NPSA nrl3d||2BTMB triosephosphate isomerase (EC 5.3.1.1) mutant YES,...    29  5.8
 NPSA nrl3d||2BTMA triosephosphate isomerase (EC 5.3.1.1) mutant YES,...    29  5.8

Total number of displayed sequences (E lesser or equal to 10) : 10
Total number of selected sequences
   (E lesser or equal to 1e-06, matching residues 1-711 of query) : 6

Second step : for selected sequences above : [back to SELECT]

Full sequences from database
Partial sequences from blastp alignments

For partial extraction : extract sequence with at least residues in matching region 1-711 (711 residues) of query.
Add query sequence to created database.
Remove identical sequences in created database.

Information and statistics : [BLASTP]

Homology search result file (text): [BLASTP]

This service is supported by MESR (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE)
Comments. Last modified: Thu Jun 15 19:02:27 2000. Current time: Thu Jun 15 19:02:27 2000