Results from PredictProtein for predict_h14790

TOC for file /home/phd/server/work/predict_h14790

The following information has been received by the server (TOC)
PROSITE motif search (A Bairoch; P Bucher and K Hofmann) (TOC)
SEG low-complexity regions (J C Wootton & S Federhen) (TOC)
ProDom domain search (E Sonnhammer; Corpet, Gouzy, D Kahn) (TOC)
MAXHOM alignment header (TOC)
MAXHOM alignment (TOC)
PHD information about accuracy (TOC)
PHD predictions (TOC)
GLOBE prediction of globularity (TOC)
TOPITS (threading) header (TOC)
TOPITS (threading) results in MSF format (TOC)
TOPITS (threading) results in HSSP format (TOC)
TOPITS (threading) results in STRIP format (TOC)
Threading results in TOPITS format (TOC)

END of TOC

BEG of results for file /home/phd/server/work/predict_h14790

The following information has been received by the server

reference predict_h14790 (Jun 26, 2000 00:04:10)
reference pred_h14790 (Jun 26, 2000 00:05:01)
PPhdr from: kapilm@cs.brandeis.edu
PPhdr resp: MAIL
PPhdr orig: HTML
PPhdr want: HTML
PPhdr password(###)
prediction of: - threading             (TOPITS)-
return msf format
ret topits hssp
ret topits strip
ret topits own
ret html
# default: single protein sequence
MCAQYCISFADVEKAHINIQDSIHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYCDPSDESREKVTQRIMQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMVAGIAITIKALKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSSIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQTVSPEVKNVCIVLSGGNVDLTSLNWVGQAERPAPYQTVSV

PROSITE motif search (A Bairoch; P Bucher and K Hofmann)

TOP - BOTTOM - PROSITE

-------------------------------------------------------------
Pattern-ID: PKC_PHOSPHO_SITE PS00005 PDOC00005
Pattern-DE: Protein kinase C phosphorylation site
Pattern:    [ST].[RK]
   54       SFK
   139      TQR
   196      TIK
   203      SVK

Pattern-ID: CK2_PHOSPHO_SITE PS00006 PDOC00006
Pattern-DE: Casein kinase II phosphorylation site
Pattern:    [ST].{2}[DE]
   8        SFAD
   71       TPEE
   212      SNAD
   235      TIAD
   261      TVTE

Pattern-ID: MYRISTYL PS00008 PDOC00008
Pattern-DE: N-myristoylation site
Pattern:    G[^EDRKHPFYW].{2}[STAGCN][^P]
   59       GALNAI
   88       GQALTY
   187      GGMVAG
   239      GVKSSI
   287      GVALAA

Pattern-ID: DEHYDRATASE_SER_THR PS00165 PDOC00149
Pattern-DE: Serine/threonine dehydratases pyridoxal-phosphate attachment site
Pattern:    [DESH].{4,5}[STVG].[AS][FYI]K[DLIFSA][RVMF][GA][LIVMGA]
   47       ELFQKTGSFKIRGA

SEG low-complexity regions (J C Wootton & S Federhen)

TOP - BOTTOM - SEG

>prot (#) ppOld, default: single protein sequence /home/phd/server/work/predict_h14790
MCAQYCISFADVEKAHINIQDSIHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGA LNAIRGLIPDTPEEKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQA YGASIVYCDPSDESREKVTQRIMQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDAL xxxxxxxxxxxx IAITIKALKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGV KSSIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQT VSPEVKNVCIVLSGGNVDLTSLNWVGQAERPAPYQTVSV

ProDom domain search (E Sonnhammer; Corpet, Gouzy, D Kahn)

TOP - BOTTOM - ProDom - MView

Identities computed with respect to: (query) prot
Colored by: consensus/70% and property

HSP processing: ranked

                                                                           26 [   .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .   ] 314
  prot           (#) ppOld, default: single ... score      P(N)  N 100.0%     TPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALEVLNQVPLVDALVVPVGGGGMVAGIAITIKALKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQTVSPEVKNVCIVLSG    
1 PD002811       p2000.1 (28) THD1(9) SDHL(3...   105   4.6e-15  2  37.0%     --------------------------------------------------------------------------------------------------------------------------------------------ILKQVDDQGNKIDAIFVPVGGGGLIAGVATYLKRISP-----------------------------------------VGEYTFELCQEYVDDIVLVSEDEICAAIKDLYEEEKVIVEPAGALAIAGLKSYKEQHKGKNVNVVCIISGG    
2 PD035210       p2000.1 (2) SDHL(2)  // L-S...    78   0.00043  1  44.1%     TPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
  consensus/100%                                                              ..................................                                                                                                          .....................................                                         .......................................................................    
  consensus/90%                                                               ..................................                                                                                                          .....................................                                         .......................................................................    
  consensus/80%                                                               ..................................                                                                                                          .....................................                                         .......................................................................    
  consensus/70%                                                               ..................................                                                                                                          .....................................                                         .......................................................................

--- ------------------------------------------------------------
--- 
--- Again: these results were obtained based on the domain data-
--- base collected by Daniel Kahn and his coworkers in Toulouse.
--- 
--- PLEASE quote: 
---       F Corpet, J Gouzy, D Kahn (1998).  The ProDom database
---       of protein domain families. Nucleic Ac Res 26:323-326.
--- 
--- The general WWW page is on:
----      ---------------------------------------
---       http://www.toulouse.inra.fr/prodom.html
----      ---------------------------------------
--- 
--- For WWW graphic interfaces to PRODOM, in particular for your
--- protein family, follow the following links (each line is ONE
--- single link for your protein!!):
--- 
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD002811 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD002811
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD002811 ==> graphical output of all proteins having domain PD002811
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom1=PD035210 ==> multiple alignment, consensus, PDB and PROSITE links of domain PD035210
http://www.toulouse.inra.fr/prodom/cgi-bin/ReqProdomII.pl?id_dom2=PD035210 ==> graphical output of all proteins having domain PD035210
--- 
--- NOTE: if you want to use the link, make sure the entire line
---       is pasted as URL into your browser!
--- 
--- END of PRODOM
--- ------------------------------------------------------------

MAXHOM alignment header

--- ------------------------------------------------------------
--- MAXHOM multiple sequence alignment
--- ------------------------------------------------------------
--- 
--- MAXHOM ALIGNMENT HEADER: ABBREVIATIONS FOR SUMMARY
--- ID           : identifier of aligned (homologous) protein
--- STRID        : PDB identifier (only for known structures)
--- IDE          : percentage of pairwise sequence identity
--- WSIM         : percentage of weighted similarity
--- LALI         : number of residues aligned
--- NGAP         : number of insertions and deletions (indels)
--- LGAP         : number of residues in all indels
--- LSEQ2        : length of aligned sequence
--- ACCNUM       : SwissProt accession number
--- OMIM         : OMIM(Online Mendelian Inheritance in Man) ID
--- NAME         : one-line description of aligned protein
--- 
--- MAXHOM ALIGNMENT HEADER: SUMMARY
ID         STRID  IDE WSIM LALI NGAP LGAP LEN2 ACCNUM OMIM    NAME                     
ykv8_yeast         40   52  319    4    8  326 P36007         HYPOTHETICAL 34.9 KD PROT
thd2_ecoli         35   47  320    4    6  329 P05792         THREONINE DEHYDRATASE CAT
y4tj_rhisn         32   44  328    4   10  332 P55664         PUTATIVE THREONINE DEHYDR
thdh_yeast         31   42  319    6   13  576 P00927         THREONINE DEHYDRATASE PRE
thdh_arxad         31   43  320    5    9  550 O42615         THREONINE DEHYDRATASE PRE
thd1_haein         31   44  327    5   10  513 P46493         DEAMINASE).              
thd1_salty         31   43  334    6   16  514 P20506         DEAMINASE).              
thd1_lyces         30   41  323    5   11  595 P25306         DEAMINASE).              
thd1_ecoli 1TDJ    30   42  334    6   16  514 P04968         DEAMINASE).              
thd1_burce         30   41  316    6   10  507 P53607         DEAMINASE).              
thd1_myctu         30   37  318    5   13  429 Q10766         DEAMINASE).              
thd1_bacsu         28   39  320    6   12  422 P37946         DEAMINASE).              
thd1_lacla         28   39  312    6   15  441 Q02145         DEAMINASE).              
thd1_soltu         28   41  185    3    3  359 P31212         (FRAGMENT).              
sdhl_rat           28   28  298    9   59  362 P09367         DEHYDRATASE (EC 4.2.1.16)
sdhl_human         28   30  297    7   16  328 P20132 182128  L-SERINE DEHYDRATASE (EC 
thd1_corgl         27   33  313    7   18  436 Q04513         DEAMINASE).              
--- 
--- MAXHOM ALIGNMENT: IN MSF FORMAT

--- ------------------------------------------------------------
--- 3D homologue: the known structure that appeared to have sig-
--- 3D homologue: nificant sequence identity to your protein is:
--- 3D homologue: 1TDJ, 
.
--- 3D homologue: Note: we do  NOT  check whether the similarity
--- 3D homologue:       is in the region for which structure has
--- 3D homologue:       been determined.  Thus, please verify!  
--- ------------------------------------------------------------

--- 
--- Version of database searched for alignment:
--- SWISS-PROT release 38.0 (7/99) with 80000 proteins
---

MAXHOM alignment

TOP - BOTTOM - MaxHom - MView

Identities computed with respect to: (1) predict_h1470
Colored by: consensus/70% and property


                           1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .        ] 339
 1 predict_h1470  100.0%     MCAQYCISFADVEKAHINIQDSIHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYCDPSDESREKVTQRIMQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMVAGIAITIKALKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSSIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQTVSPEVKNVCIVLSGGNVDLTSLNWVGQAERPAPYQTVSV    
 2 ykv8_yeast      39.6%     -------TYGDVLDASNRIKEYVNKTPVLTSRMLNDRLGAQIYFKGENFQRVGAFKFRGAMNAVSKL---SDEKRSKGVIAFSSGNHAQAIALSAKLLNVPATIVMPEDAPALKVAATAGYGAHIIRYNRYTEDREQIGRQLAAEHGFALIPPYDHPDVIAGQGTSAKELLEEVGQLDALFVPLGGGGLLSGSALAARSLSPGCKIFGVEPEAGNDGQQSFRSGSIV-HINTPKTIADGAQthLGEYTFAIIRENVDDILTVSDQELVKCMHFLAERMKVVVEPTACLGFAGALLKKEELVG---KKVGIILSGGNVDMKRYATLISGKEDGP------    
 3 thd2_ecoli      33.8%     ITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSL---TDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRT-TGTLADGCdsRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTV-SIISGGNIDLSRVSQI--------------    
 4 y4tj_rhisn      31.0%     MNELSNLSLESIERARERIEEHVFRTPLTTSRSLTELTGTQVSLKLEHYQRTGSFKLRGATNAILQL---SPSDRARGVIAASTGNHGRALSYAAKAVGSRATICMSDLVPENKVSEIRKLGATVRIVGSSQDDAQVEVERLVAEEGLSMIPPFDHPHIIAGQRTVGLEIVEAMPDVAMVLLPLSGGGLAAGVAAAVKALRPHARIIGVTMDRGAAMKASIEAGHPV-QVKEYRSLADSLGGGIGmwTFQMCRALLDDVVLVNEGEIAAGIRHAYEHERQILEGAGAVGIAALLSG---KVAARGGSVGVVLSGQNIDMGLHREVINGVVRATEE----    
 5 thdh_yeast      30.6%     ---------------RSSVYDVINESPISQGVGLSSRLNTNVILKREDLLPVFSFKLRGAYNMIAKL---DDSQRNQGVIACSAGNHAQGVAFAAKHLKIPATIVMPVCTPSIKYQNVSRLGSQVVLYGNDFDEAKAECAKLAEERGLTNIPPFDHPYVIAGQGTVAMEILRQVrkIGAVFVPVGGGGLIAGIGAYLKRVAPHIKIIGVETYDAATLHNSLQRNQRTP-LPVVGTFADGTSvmIGEETFRVAQQVVDEVVLVNTDEICAAVKDIFEDTRSIVEPSGALSVAGMKK-YISTVHPEinTYVPILSGANMNFDRLRFVSERAVLGEGKEVFM    
 6 thdh_arxad      30.6%     ---------------TSKVYDVCNETPVTPAVNLSSKLGANIFLKREDLQPVFSFKLRGAYNMMAHLP---QETRWKGVIACSAGNHAQGVAYSAKHLNIPATIVMPVVTPAIKYKNVDRLGAKVVLHGNDFDAAKAECNRLSEKHGLTNIPLFDNPYVIAGQGTIGVELLRQIdsLKAIFVCIGGGGLIAGVGAYIKRIAPQVKIIGVETYDANAMRQSLQKGERI-TLSEVGLFADGAAviLGEETFRLCQQVVDEIVLVSTDEICAAIKDVFTETRSIVEPAGALSVAGLVkeSHPEIDHSASGYTAILSGANMDFDRLRFVSERAKLGEGSEVFI    
 7 thd1_haein      30.1%     -------SQSDYINAIVKLGSRVyvTPLQKMGKLSERLHNNIWIKREDRQPVNSFKLRGAYAMISSL---SAEQKAAGVIAASAGNHAQGVALSAKQLGLKALIVMPQNTPSIKVDAVRGFGGEVLLHGANFDEAKAKAIELSKEKNMTFIPPFDHPLVIAGQGTLAMEMLQQVADLDYVFVQVGGGGLAAGVAILLKQFMPEIKIIGVESKDSACLKAALDKGEPT-DLTHIGLFADGVAvrIGDETFRLCQQYLDDMVLVDSDEVCAAMKDLFENVRAVAEPSGALGLAGLKKYVKQNHI-EGKNMAAILSGANLNFHTLRYVSERCEIGENREALL    
 8 thd1_salty      29.8%     MAESQPLSVAPEGAEYlpVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMTGL---TEEQKAHGVITASAGNHAQGVAFSSARLGVKSLIVMPKATADIKVDAVRGLGGEVLLHGANFDEAKAKAIELAQQQGFTWVPPFDHPMVIAGQGTLALELLQQDSHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA-CLKAALEAGHPVDLPRVGLFAEGVAvrIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIAQH-NIRGERLAHVLSGANVNFHGLRYVSEreQREGLLTVTI    
 9 thd1_lyces      29.6%     -----------VDILASPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNL---SREELDKGVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIPPFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRV-KLSNVDTFADGVAvlVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAA-YCEFYKIKNENIVAIASGANMDFSKLHKVTELakEALLATFMV    
10 thd1_ecoli      29.2%     MADSQPLSGAPEGAEYlpVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGL---TEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA-CLKAALDAGHPVDLPRVGLFAEGVAvrIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKK-YIALHNIRGERLAHILSGANVNFHGLRYVSEreQREALLAVTI    
11 thd1_burce      29.3%     ---------------TARVYDVAFETELEPARNLSARLRNPVYLKREDNQPVFSFKLRGAYNKMAHIP---ADALARGVITASAGNHAQGVAFSAARMGVKAVIVVPVTTPQVKVDAVRAHGGPGVEVIQAGESYSDaaLKVQEERGLTFVHPFDDPYVIAGQGTIAMEILRQHqpIHAIFVPIGGGGLAAGVAAYVKAVRPEIKVIGVQAEDSCAMAQSLQAGKRV-ELAEVGLFADGTAvlVGEETFRLCKEYLDGVVTVDTDALCAAIKDVFQDTRSVLEPSGALAVAGAKL-YAEREGIENQTLVAVTSGANMNFDRMRFVAERAEVGEARE---    
12 thd1_myctu      28.6%     --PLFSLSGADIDRAAKRIAPVVTPTPLQPSDRLSAITGATVYLKREDLQTVRSYKLRGAYNLLVQL---SDEELAAGVVCSSAGNHAQGFAYACRCLGVHGRVYVPAKTPKQKRDRIRYHGGEFIDLIVGGSTYDLAAAAALEDVErtLVPPFDDLRTIAGQGTIAVEVLGQLeePDLVVVPVGGGGCIAGITTYLAERTTNTAVLGVEPAGAAAMMAALAAGEPVTLDHVDQFVDGAAVNRAGTLTYAALAAAGDMVstVDEGAVCTAMLDLYQNEGIIAEPAGALSVAGLLEADIEPGST----VVCLISGGNNDVSRYGEVLE------------    
13 thd1_bacsu      28.4%     LKENSLIQVKHILKAHQNVKDVVIHTPLQRNDRLSERYECNIYLKREDLQVVRSFKLRGAYHKMKQL---SSEQTENGVVCASAGNHAQGVAFSCKHLGIHGKIFMPSTTPRQKVSQVELFGKgiILTGDTFDDVYKSAAECCEAESRTFIHPFDDPDVMAGQGTLAVEILNDIdePHFLFASVGGGGLLSGVGTYLKNVSPDTKVIAVEPAGAASYFESNKAGHVV-TLDKIDKFVDGAAvkIGEETFRTLETVVDDILLVPEGKVCTSILELYNECAVVAEPAGALSVAALDLYKDQIKG---KNVVCVVSGGNNDIGRMQEMKE------------    
14 thd1_lacla      28.2%     --------LSNKYQANIYLKEVVTKTPLQLDPYLSNKYQANIYLKEENLQKVRSFKLRGAYYSISKL---SDEQRSKGVVCASAGNHAQGVAFAANQLNISATIFMPVTTPNQKISQVKFFGESHVtiGDTFDESARAAKAFSQDNDKPFIDPFDDENVIAGQGTVALEIFAQAksLDKIFVQIGGGGLIAGITAYSKERYPQTEIIGVEAKGATSMKAAYSAGQPV-TLEHIDKFADGIAvtVGQKTYQLINDKVKQLLAVDEGLISQTILELYSKLGIVAEPAGATSVAALELIKDEIKG---KNIVCIISGGNNDISRMQEIEE------------    
15 thd1_soltu      28.9%     --------------------------------------------------------------------------------------------------------------------------------------------------------PFDAPGVIKGQGTIGTEINRQLKDIHAVFVPVGGGGLISGVAAYFTQVAPHTKIIGVEPYGAASMTLSLYEGHRV-KLENVDTFADGVAvlVGEYTFAKCQELIDGMVLVRNDGISAAIKDVYDEGRNILETSGAVAIAGAAA-YCEFYNIKNENIVAIASGANMDFSKLHKVTELAELGSDNEALL    
16 sdhl_rat        27.1%     -------------------QESLhkTPLRDSMALSKVAGTSVFLKMDSSQPSGSFKIRGIGHLCkaLLPDTPSPL-------TAGNAGMATAYAARRLGLPATIVVPSTTPALTIERLKNEGATVEVVGEMLDEAIQLAKALEKNNPgvYISPFDDPLIWEGHTSLVKELKETLskPGAIVLSVGGGGLLCGVVQGLREvwEDVPIIAMETFGAHS-FHAAVKEGKLVTLPKITSVAKALgnTVGAQTLKLFYEHPIFSEVISDQEAVTAIEKFVDDEKILVEPACGAALAAVYSGvgRLQTPLASLVVIVCGGSNISLAQLQAL--------------    
17 sdhl_human      27.2%     -------------------------TPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA----KQGCAHFVCSSAGNAGMAAAY