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Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics

Chairs
K. Bretonnel Cohen (University of Colorado School of Medicine)
Lynette Hirschman (MITRE)
Hagit Shatkay (Queen’s University)
Christian Blaschke (bioalma)

Full proceedings volume (PDF)
Schedule and author index (HTML)
Bibliography (BibTeX)
Live website


pdf ps bib Front matter
pdf ps bib Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data
Ben Wellner
pp. 1–8
pdf ps bib Adaptive String Similarity Metrics for Biomedical Reference Resolution
Ben Wellner, José Castaño and James Pustejovsky
pp. 9–16
pdf ps bib Unsupervised Gene/Protein Named Entity Normalization Using Automatically Extracted Dictionaries
Aaron Cohen
pp. 17–24
pdf ps bib A Machine Learning Approach to Acronym Generation
Yoshimasa Tsuruoka, Sophia Ananiadou and Jun’ichi Tsujii
pp. 25–31
pdf ps bib MedTag: A Collection of Biomedical Annotations
Lawrence H. Smith, Lorraine Tanabe, Thomas Rindflesch and W. John Wilbur
pp. 32–37
pdf ps bib Corpus Design for Biomedical Natural Language Processing
K. Bretonnel Cohen, Lynne Fox, Philip V. Ogren and Lawrence Hunter
pp. 38–45
pdf ps bib Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions
Arun Ramani, Razvan Bunescu, Raymond Mooney and Edward Marcotte
pp. 46–53
pdf ps bib IntEx: A Syntactic Role Driven Protein-Protein Interaction Extractor for Bio-Medical Text
Syed Toufeeq Ahmed, Deepthi Chidambaram, Hasan Davulcu and Chitta Baral
pp. 54–61

Last modified on June 11, 2005, 9:20 a.m.