ACL 2007 CD | WORKSHOP ONLINE | ACL 2007 ONLINE | ACL ONLINE

Biological, translational, and clinical language processing

Chairs
K. Bretonnel Cohen
Dina Demner-Fushman
Carol Friedman
Lynette Hirschman
John Pestian

Full proceedings volume (PDF)
Schedule and author index (HTML)
Bibliography (BibTeX)
Live website


pdf ps bib Front matter
pdf ps bib Syntactic complexity measures for detecting Mild Cognitive Impairment
Brian Roark, Margaret Mitchell and Kristy Hollingshead
pp. 1–8
pdf ps bib Determining the Syntactic Structure of Medical Terms in Clinical Notes
Bridget McInnes, Ted Pedersen and Serguei Pakhomov
pp. 9–16
pdf ps bib The Role of Roles in Classifying Annotated Biomedical Text
Son Doan, Ai Kawazoe and Nigel Collier
pp. 17–24
pdf ps bib On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA
Sampo Pyysalo, Filip Ginter, Veronika Laippala, Katri Haverinen, Juho Heimonen and Tapio Salakoski
pp. 25–32
pdf ps bib An Unsupervised Method for Extracting Domain-specific Affixes in Biological Literature
Haibin Liu, Christian Blouin and Vlado Keselj
pp. 33–40
pdf ps bib Combining multiple evidence for gene symbol disambiguation
Hua Xu, Jung-Wei Fan and Carol Friedman
pp. 41–48
pdf ps bib Mining a Lexicon of Technical Terms and Lay Equivalents
Noemie Elhadad and Komal Sutaria
pp. 49–56
pdf ps bib Annotation of Chemical Named Entities
Peter Corbett, Colin Batchelor and Simone Teufel
pp. 57–64
pdf ps bib Recognising Nested Named Entities in Biomedical Text
Beatrice Alex, Barry Haddow and Claire Grover
pp. 65–72
pdf ps bib Exploring the Efficacy of Caption Search for Bioscience Journal Search Interfaces
Marti Hearst, Anna Divoli, Ye Jerry and Michael Wooldridge
pp. 73–80
pdf ps bib ConText: An Algorithm for Identifying Contextual Features from Clinical Text
Wendy Chapman, John Dowling and David Chu
pp. 81–88
pdf ps bib BioNoculars: Extracting Protein-Protein Interactions from Biomedical Text
Amgad Madkour, Kareem Darwish, Hany Hassan, Ahmed Hassan and Ossama Emam
pp. 89–96
pdf ps bib A shared task involving multi-label classification of clinical free text
John P. Pestian, Chris Brew, Pawel Matykiewicz, DJ Hovermale, Neil Johnson, K. Bretonnel Cohen and Wlodzislaw Duch
pp. 97–104
pdf ps bib From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches
Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurelie Neveol, Lee Peters and Willie J. Rogers
pp. 105–112
pdf ps bib Automatically Restructuring Practice Guidelines using the GEM DTD
Amanda Bouffier and Thierry Poibeau
pp. 113–120
pdf ps bib A Study of Structured Clinical Abstracts and the Semantic Classification of Sentences
Grace Chung and Enrico Coiera
pp. 121–128
pdf ps bib Automatic Code Assignment to Medical Text
Koby Crammer, Mark Dredze, Kuzman Ganchev, Partha Pratim Talukdar and Steven Carroll
pp. 129–136
pdf ps bib Interpreting comparative constructions in biomedical text
Marcelo Fiszman, Dina Demner-Fushman, Francois M. Lang, Philip Goetz and Thomas C. Rindflesch
pp. 137–144
pdf ps bib The Extraction of Enriched Protein-Protein Interactions from Biomedical Text
Barry Haddow and Michael Matthews
pp. 145–152
pdf ps bib What’s in a gene name? Automated refinement of gene name dictionaries
Jörg Hakenberg
pp. 153–160
pdf ps bib Exploring the Use of NLP in the Disclosure of Electronic Patient Records
David Hardcastle and Catalina Hallett
pp. 161–162
pdf ps bib BaseNPs that contain gene names: domain specificity and genericity
Ian Lewin
pp. 163–170
pdf ps bib Challenges for extracting biomedical knowledge from full text
Tara McIntosh and James R. Curran
pp. 171–178
pdf ps bib Adaptation of POS Tagging for Multiple BioMedical Domains
John E. Miller, Manabu Torii and K. Vijay-Shanker
pp. 179–180
pdf ps bib Information Extraction from Patients’ Free Form Documentation
Agnieszka Mykowiecka and Malgorzata Marciniak
pp. 181–182
pdf ps bib Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations
Aurelie Neveol, James G. Mork and Alan R. Aronson
pp. 183–190
pdf ps bib Developing Feature Types for Classifying Clinical Notes
Jon Patrick, Yitao Zhang and Yefeng Wang
pp. 191–192
pdf ps bib Quantitative Data on Referring Expressions in Biomedical Abstracts
Michael Poprat and Udo Hahn
pp. 193–194
pdf ps bib Discovering contradicting protein-protein interactions in text
Olivia Sanchez and Massimo Poesio
pp. 195–196
pdf ps bib Marking time in developmental biology
Gail Sinclair and Bonnie Webber
pp. 197–198
pdf ps bib Evaluating and combining and biomedical named entity recognition systems
Andreas Vlachos
pp. 199–200
pdf ps bib Unsupervised Learning of the Morpho-Semantic Relationship in MEDLINE
W. John Wilbur
pp. 201–208
pdf ps bib Reranking for Biomedical Named-Entity Recognition
Kazuhiro Yoshida and Jun’ichi Tsujii
pp. 209–216

Last modified on May 29, 2007, 9:05 p.m.