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Proceedings of BioNLP Shared Task 2011 Workshop

Chairs
Jun’ichi Tsujii
Jin-Dong Kim
Sampo Pyysalo

Full proceedings volume (PDF)
Schedule and author index (HTML)
Bibliography (BibTeX)
Live website


pdf bib Front matter pages
pdf bib Overview of BioNLP Shared Task 2011
Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan Nguyen and Jun’ichi Tsujii 		pp. 1–6
pdf bib Overview of Genia Event Task in BioNLP Shared Task 2011
Jin-Dong Kim, Yue Wang, Toshihisa Takagi and Akinori Yonezawa 		pp. 7–15
pdf bib Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011
Tomoko Ohta, Sampo Pyysalo and Jun’ichi Tsujii 		pp. 16–25
pdf bib Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun’ichi Tsujii and Sophia Ananiadou 		pp. 26–35
pdf bib Biomedical Event Extraction from Abstracts and Full Papers using Search-based Structured Prediction
Andreas Vlachos and Mark Craven 		pp. 36–40
pdf bib Event Extraction as Dependency Parsing for BioNLP 2011
David McClosky, Mihai Surdeanu and Christopher Manning 		pp. 41–45
pdf bib Robust Biomedical Event Extraction with Dual Decomposition and Minimal Domain Adaptation
Sebastian Riedel and Andrew McCallum 		pp. 46–50
pdf bib Model Combination for Event Extraction in BioNLP 2011
Sebastian Riedel, David McClosky, Mihai Surdeanu, Andrew McCallum and Christopher D. Manning 		pp. 51–55
pdf bib BioNLP Shared Task 2011 - Bacteria Biotope
Robert Bossy, Julien Jourde, Philippe Bessières, Maarten van de Guchte and Claire Nédellec 		pp. 56–64
pdf bib BioNLP Shared Task 2011 – Bacteria Gene Interactions and Renaming
Julien Jourde, Alain-Pierre Manine, Philippe Veber, Karën Fort, Robert Bossy, Erick Alphonse and Philippe Bessières 		pp. 65–73
pdf bib Overview of BioNLP 2011 Protein Coreference Shared Task
Ngan Nguyen, Jin-Dong Kim and Jun’ichi Tsujii 		pp. 74–82
pdf bib Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011
Sampo Pyysalo, Tomoko Ohta and Jun’ichi Tsujii 		pp. 83–88
pdf bib The Taming of Reconcile as a Biomedical Coreference Resolver
Youngjun Kim, Ellen Riloff and Nathan Gilbert 		pp. 89–93
pdf bib Extracting Bacteria Biotopes with Semi-supervised Named Entity Recognition and Coreference Resolution
Nhung T. H. Nguyen and Yoshimasa Tsuruoka 		pp. 94–101
pdf bib BioNLP 2011 Task Bacteria Biotope – The Alvis system
Zorana Ratkovic, Wiktoria Golik, Pierre Warnier, Philippe Veber and Claire Nédellec 		pp. 102–111
pdf bib BioNLP Shared Task 2011: Supporting Resources
Pontus Stenetorp, Goran Topić, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim and Jun’ichi Tsujii 		pp. 112–120
pdf bib Sentence Filtering for BioNLP: Searching for Renaming Acts
Pierre Warnier and Claire Nédellec 		pp. 121–129
pdf bib Complex Biological Event Extraction from Full Text using Signatures of Linguistic and Semantic Features
Liam R. McGrath, Kelly Domico, Courtney D. Corley and Bobbie-Jo Webb-Robertson 		pp. 130–137
pdf bib Using Kybots for Extracting Events in Biomedical Texts
Arantza Casillas, Arantza Díaz de Ilarraza, Koldo Gojenola, Maite Oronoz and German Rigau 		pp. 138–142
pdf bib Extracting Biological Events from Text Using Simple Syntactic Patterns
Quoc-Chinh Bui and Peter. M.A. Sloot 		pp. 143–146
pdf bib Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction
Sofie Van Landeghem, Thomas Abeel, Bernard De Baets and Yves Van de Peer 		pp. 147–148
pdf bib A Pattern Approach for Biomedical Event Annotation
Quang Le Minh, Son Nguyen Truong and Quoc Ho Bao 		pp. 149–150
pdf bib An Incremental Model for the Coreference Resolution Task of BioNLP 2011
Don Tuggener, Manfred Klenner, Gerold Schneider, Simon Clematide and Fabio Rinaldi 		pp. 151–152
pdf bib Double Layered Learning for Biological Event Extraction from Text
Ehsan Emadzadeh, Azadeh Nikfarjam and Graciela Gonzalez 		pp. 153–154
pdf bib MSR-NLP Entry in BioNLP Shared Task 2011
Chris Quirk, Pallavi Choudhury, Michael Gamon and Lucy Vanderwende 		pp. 155–163
pdf bib From Graphs to Events: A Subgraph Matching Approach for Information Extraction from Biomedical Text
Haibin Liu, Ravikumar Komandur and Karin Verspoor 		pp. 164–172
pdf bib Adapting a General Semantic Interpretation Approach to Biological Event Extraction
Halil Kilicoglu and Sabine Bergler 		pp. 173–182
pdf bib Generalizing Biomedical Event Extraction
Jari Björne and Tapio Salakoski 		pp. 183–191

Last modified on May 18, 2011, 1:26 a.m.