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Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task

Chairs
Jun’ichi Tsujii (University of Tokyo)

Full proceedings volume (PDF)
Schedule and author index (HTML)
Bibliography (BibTeX)
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pdf bib Front matter
pdf bib Overview of BioNLP’09 Shared Task on Event Extraction
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano and Jun’ichi Tsujii 		pp. 1–9
pdf bib Extracting Complex Biological Events with Rich Graph-Based Feature Sets
Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala and Tapio Salakoski 		pp. 10–18
pdf bib Event Extraction from Trimmed Dependency Graphs
Ekaterina Buyko, Erik Faessler, Joachim Wermter and Udo Hahn 		pp. 19–27
pdf bib UZurich in the BioNLP 2009 Shared Task
Kaarel Kaljurand, Gerold Schneider and Fabio Rinaldi 		pp. 28–36
pdf bib Biomedical Event Extraction without Training Data
Andreas Vlachos, Paula Buttery, Diarmuid Ó Séaghdha and Ted Briscoe 		pp. 37–40
pdf bib A Markov Logic Approach to Bio-Molecular Event Extraction
Sebastian Riedel, Hong-Woo Chun, Toshihisa Takagi and Jun’ichi Tsujii 		pp. 41–49
pdf bib High-precision biological event extraction with a concept recognizer
K. Bretonnel Cohen, Karin Verspoor, Helen Johnson, Chris Roeder, Philip Ogren, William Baumgartner, Elizabeth White and Lawrence Hunter 		pp. 50–58
pdf bib A memory-based learning approach to event extraction in biomedical texts
Roser Morante, Vincent Van Asch and Walter Daelemans 		pp. 59–67
pdf bib Extraction of biomedical events using case-based reasoning
Mariana Neves, José-María Carazo and Alberto Pascual-Montano 		pp. 68–76
pdf bib Biomedical Event Annotation with CRFs and Precision Grammars
Andrew MacKinlay, David Martinez and Timothy Baldwin 		pp. 77–85
pdf bib Molecular event extraction from Link Grammar parse trees
Jörg Hakenberg, Illes Solt, Domonkos Tikk, Luis Tari, Astrid Rheinländer, Nguyen Quang Long, Graciela Gonzalez and Ulf Leser 		pp. 86–94
pdf bib Tunable Domain-Independent Event Extraction in the MIRA Framework
Georgi Georgiev, Kuzman Ganchev, Vassil Momchev, Deyan Peychev, Preslav Nakov and Angus Roberts 		pp. 95–98
pdf bib BioEve: Bio-Molecular Event Extraction from Text Using Semantic Classification and Dependency Parsing
Syed Toufeeq Ahmed, Radhika Nair, Chintan Patel and Hasan Davulcu 		pp. 99–102
pdf bib From Protein-Protein Interaction to Molecular Event Extraction
Rune Sætre, Makoto Miwa, Kazuhiro Yoshida and Jun’ichi Tsujii 		pp. 103–106
pdf bib A Multi-Phase Approach to Biomedical Event Extraction
Hyoung-Gyu Lee, Han-Cheol Cho, Min-Jeong Kim, Joo-Young Lee, Gumwon Hong and Hae-Chang Rim 		pp. 107–110
pdf bib Supervised Classification for Extracting Biomedical Events
Arzucan Ozgur and Dragomir Radev 		pp. 111–114
pdf bib Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances
Farzaneh Sarafraz, James Eales, Reza Mohammadi, Jonathan Dickerson, David Robertson and Goran Nenadic 		pp. 115–118
pdf bib Syntactic Dependency Based Heuristics for Biological Event Extraction
Halil Kilicoglu and Sabine Bergler 		pp. 119–127
pdf bib Analyzing text in search of bio-molecular events: a high-precision machine learning framework
Sofie Van Landeghem, Yvan Saeys, Bernard De Baets and Yves Van de Peer 		pp. 128–136
pdf bib Exploring ways beyond the simple supervised learning approach for biological event extraction
György Móra, Richárd Farkas, György Szarvas and Zsolt Molnár 		pp. 137–140

Last modified on May 15, 2009, 9:33 a.m.